Basic Information
VIS ID
TVIS10009725
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
81
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCTGCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGA| |ACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCC
Host Sequence
Chromosome
chrX
Cytoband
q23
Reference genome
GRCh37/hg19
Start
113144127/113900849 (Hg38)
End
113144127/113900849 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/1120061; hsa-mir-105-1/Downstream/738586;
Nearest TSS
ENST00000429181/Upstream/1060034; ENST00000371951/Downstream/37369;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/1059262, chrX-CpG: 18/Downstream/489648
Nearby gene
AMOT(-1060084) ; HTR2C(+674424) ;
Upstream sequence
gtcaagaagtaaaagcagagagatgaactattctttaggaagatttgttgacaaaattttctattcagtagctagagaactaagtggggctgagggaaga
Downstream sequence
gctgggactacaggcgcccgccaccgcgcccggctaattttttgtatttttagtagagacggggtttcaccgtgttagccaagatggtctcgatctcctg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate