Basic Information
VIS ID
TVIS10009744
Fusion event
HBV-chrX integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1802
Orient
-
Integrated sequence
GCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCT| |GCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGC
Host Sequence
Chromosome
chrX
Cytoband
q11.1
Reference genome
GRCh37/hg19
Start
61708063/62488593 (Hg38)
End
61708063/62488593 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-let-7f-2/Upstream/7037011; hsa-mir-105-1/Downstream/1297409;
Nearest TSS
ENST00000429181/Upstream/4577773; ENST00000451979/Downstream/861053;
Nearest CpG islands
None/Target, chrX-CpG: 62/Upstream/4578106, chrX-CpG: 51/Downstream/862480
Nearby gene
SPIN4(+859044) ;
Upstream sequence
gcgcctgtagtcccagctactcgggaagctgaggcaggagaatggcgtgaaccccggaggtggagcttgcagtgagccgagatcgcgccactgcactcca
Downstream sequence
tgaacatatacccgttttgaacgaaggccacccagtggtccaaatatccacttgcagattctacagaaagagtgtttcgaacctgaactctcaaatgcag
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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