VISDB Viral Integration Site DataBase

VIS ID

TVIS10009747

Fusion event

HBV-RLIM integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

1936

Orient

-

Integrated sequence

CTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTA| |CTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCC

Chromosome

chrX

Cytoband

q13.2

Reference genome

Start

End

73829320/74609485 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-186-5p ; hsa-mir-15b-5p ; hsa-mir-10a-5p ; hsa-mir-100-5p ; hsa-mir-6715a-3p ; hsa-mir-507 ; hsa-mir-557 ; hsa-mir-1250-3p ; hsa-mir-4307 ; hsa-mir-4803 ; hsa-mir-3609 ; hsa-mir-548ah-5p ; hsa-mir-544a ; hsa-mir-4470 ; hsa-mir-548o-3p ; hsa-mir-1323 ; hsa-mir-3912-5p ; hsa-mir-4666b ; hsa-mir-4291 ; hsa-mir-5702 ; hsa-mir-761 ; hsa-mir-3619-5p ; hsa-mir-214-3p ; hsa-mir-922 ; hsa-mir-519c-3p ; hsa-mir-519b-3p ; hsa-mir-519a-3p ; hsa-mir-4796-3p ; hsa-mir-142-5p ; hsa-mir-5590-3p ; hsa-mir-106b-5p ; hsa-mir-17-5p ; hsa-mir-20a-5p ; hsa-mir-106a-5p ; hsa-mir-20b-5p ; hsa-mir-519d-3p ; hsa-mir-526b-3p ; hsa-mir-93-5p ; hsa-mir-4274 ; hsa-mir-3680-3p ; hsa-mir-450b-5p ; hsa-mir-3658 ; hsa-mir-527 ; hsa-mir-518a-5p ; hsa-mir-3653-3p ; hsa-mir-19b-2-5p ; hsa-mir-19b-1-5p ; hsa-mir-19a-5p ; hsa-mir-2052 ; hsa-mir-4696 ; hsa-mir-4735-3p ; hsa-mir-18b-5p ; hsa-mir-18a-5p ; hsa-mir-4662a-3p ; hsa-mir-3646 ; hsa-mir-3662 ; hsa-mir-548t-5p ; hsa-mir-548az-5p ; hsa-mir-203a-3p ; hsa-mir-130a-3p ; hsa-mir-301b-3p ; hsa-mir-3666 ; hsa-mir-4295 ; hsa-mir-454-3p ; hsa-mir-301a-3p ; hsa-mir-130b-3p ; hsa-mir-19a-3p ; hsa-mir-19b-3p ; hsa-mir-7977 ; hsa-mir-338-3p ; hsa-mir-7157-5p ; hsa-mir-4310 ; hsa-mir-6516-5p ; hsa-mir-455-3p ; hsa-mir-6499-3p ; hsa-mir-4537 ; hsa-mir-136-5p ; hsa-mir-4275 ; hsa-mir-4262 ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181b-5p ; hsa-mir-181a-5p ; hsa-mir-7849-3p ; hsa-mir-1295b-5p ; hsa-mir-1827 ; hsa-mir-1910-3p ; hsa-mir-1912 ; hsa-mir-2467-3p ; hsa-mir-25-3p ; hsa-mir-32-5p ; hsa-mir-363-3p ; hsa-mir-367-3p ; hsa-mir-377-5p ; hsa-mir-4257 ; hsa-mir-6086 ; hsa-mir-6511a-5p ; hsa-mir-6807-5p ; hsa-mir-767-5p ; hsa-mir-92a-3p ; hsa-mir-92b-3p

Nearest miRNA

hsa-let-7f-2/Upstream/322128; hsa-mir-105-1/Downstream/2309788;

Nearest TSS

Nearest CpG islands

None/Target, chrX-CpG: 62/Upstream/72536, chrX-CpG: 56/Downstream/4679

Upstream sequence

gggttagggttagggtagggttagggttagggttaggggttaggggttagggtagggttagggtgagggtgagggtgagggtgagggtgagggtgagggt

Downstream sequence

tcaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaTTAAAATCACTTAACTAAAAAAGAAAGTATTATCTATACCAATCAGTTATTTGAGGAAGTAATTTTGT