VISDB Viral Integration Site DataBase

VIS ID

TVIS10009761

Fusion event

HBV-DISP1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|precore/core protein|

Start

1827

Orient

-

Integrated sequence

AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT

Chromosome

chr1

Cytoband

q41

Reference genome

Start

End

223161189/222987847 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-124-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2787228; hsa-mir-1182/Downstream/1269193;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/172628, chr1-CpG: 19/Downstream/93629

Upstream sequence

TAAAAATGCATAACTTCTGATTCATTTGAGAGAAAATGAATCCATTTAAAATAAAGTGTAATGAATAATTGTATAAGCCTGGGGCCATTTTCATTTCACA

Downstream sequence

GGGCTGATATTTTAATGGTCTAAAATGTAAAGGACTCTTTTTAAGTCTGAAGCAATGAAAGTAGTCTCAAATGTGCTATTGAGACAGAGGACTTTATTGC