VISDB Viral Integration Site DataBase

VIS ID

TVIS10009791

Fusion event

HBV-STAG1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1804

Orient

-

Integrated sequence

ATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGC| |GCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCAT

Chromosome

chr3

Cytoband

q22.3

Reference genome

Start

End

136445761/136726919 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-128-3p ; hsa-mir-26b-5p ; hsa-mir-149-5p ; hsa-mir-92a-3p ; hsa-mir-25-3p ; hsa-mir-2277-3p ; hsa-mir-212-3p ; hsa-mir-132-3p ; hsa-mir-4742-3p ; hsa-mir-8485 ; hsa-mir-6513-5p ; hsa-mir-5089-5p ; hsa-mir-6728-5p ; hsa-mir-769-3p ; hsa-mir-450b-3p ; hsa-mir-181d-5p ; hsa-mir-181c-5p ; hsa-mir-181a-5p ; hsa-mir-181b-5p

Nearest miRNA

hsa-let-7g/Upstream/2289013; hsa-mir-1224/Downstream/14838957;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/476196, chr3-CpG: 172/Downstream/24672

Upstream sequence

caatttttttctctcttgctcctgtaccattcccaccagaacagaaacatgctatactattatccctttaaaaacctatttttcccatgtgcccttctag

Downstream sequence

gaattcctagagccatttctgctaaaaagatttatccttgctcttccctgtatctggaccattcttgcctaggttctgtacacatcctcagcttaaattt