Basic Information
VIS ID
TVIS10009799
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
332
Orient
+
Integrated sequence
TCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAA| |TCACTCACCAACCTCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATC
Host Sequence
Chromosome
chr5
Cytoband
q35.2
Reference genome
GRCh37/hg19
Start
173113728/173686725 (Hg38)
End
173113728/173686725 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA5G
Nearest miRNA
hsa-mir-10397/Upstream/339189; hsa-mir-1229/Downstream/1065009;
Nearest TSS
ENST00000502646/Upstream/44206; ENST00000521373/Downstream/2734;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/69833, chr5-CpG: 23/Downstream/201203
Nearby gene
BOD1(-70062) ; CPEB4(+201603) ;
Upstream sequence
AGCCTTCTTATTTTTAAAATGATAATTTCTTTGTTTCATCCCAATGTAGTAAAGAAATGGTCAGGCTAGTGGCTGATTAAATGGGTCACAACTGGTGGCT
Downstream sequence
AGAAGAATAGAAATCACACTTAGAATCCAGCTCCTTCCTGGTCTGGCCCATTACAGGCCTTTCCAACTTCACATGCCACTCCCCCGTCACTGGCCACTGT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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