Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009862
Fusion event
HBV-DAB1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
2754
Orient
+
Integrated sequence
ATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTAGACACTATTTACA| |CACTCTATGGAAGGCGGGTATATTATATAAGAGAGAAACAACACATAGCGCCTCATTTTGTGGGTCACCATATTCTTGGGAACAAGATCTACAGCATGGG
Host Sequence
Chromosome
chr1
Cytoband
p32.2
Reference genome
Start
End
58233067/57767395 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-12136/Upstream/2541672; hsa-mir-101-1/Downstream/1965832;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/342430, chr1-CpG: 87/Downstream/482205
Upstream sequence
tgtgttatgaataacaaaagatactcctatcacctctatcactcaggaaattccaagagttttaggagctgtatgccaggaacaaggacaaagaccaaat
Downstream sequence
atgtatttcttatGCTACACtgctcaaatgtcttctagtcaataaggcttcccttgacccgtctgaataatatagcagttctgtctctcctctgtactct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.