CNTN5 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10009891
Fusion event
HBV-CNTN5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1827
Orient
-
Integrated sequence
AAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTT| |CACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAAT
Host Sequence
Chromosome
chr11
Cytoband
q22.1
Reference genome
GRCh37/hg19
Start
99951480/100080748 (Hg38)
End
99951480/100080748 (Hg38)
Orient
+
Location type
Intronic
Target gene
CNTN5
Nearest miRNA
hsa-mir-10392/Upstream/3739222; hsa-let-7a-2/Downstream/1439072;
Nearest TSS
ENST00000527297/Upstream/10347; ENST00000524560/Downstream/110429;
Nearest CpG islands
None/Target, chr11-CpG: 30/Upstream/1059657, chr11-CpG: 64/Downstream/606444
Upstream sequence
TTCCACCTACATGCTGGGTTTGCTAATGAACAAGCTGTTTTGTTGTTTCCTCTGTGACAGTGTCTTTTACATATTAAGAACGTAAAACAATATAAACTTT
Downstream sequence
AAGTATCTGGGTTTTCCTTAGTGTGTAAGAAATTGTATAATGAAAGAAAATTAGCATTCATAAATCAAGAATGTACAATTTGAATTTATATGTGAATTAA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate