VISDB Viral Integration Site DataBase

VIS ID

TVIS10009894

Fusion event

HBV-PYROXD1 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

1921

Orient

+

Integrated sequence

CTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATA| |AAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGA

Chromosome

chr12

Cytoband

p12.1

Reference genome

Start

End

21621167/21468233 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4302 ; hsa-mir-4276 ; hsa-mir-6733-3p ; hsa-mir-590-3p ; hsa-mir-30e-3p ; hsa-mir-30d-3p ; hsa-mir-30a-3p ; hsa-mir-4775

Nearest miRNA

hsa-mir-1244-3/Upstream/3794839; hsa-let-7i/Downstream/2744188;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/30382, chr12-CpG: 29/Downstream/33476

Upstream sequence

ACTCCACATGGTTTAATGTATCCACATCCTACATATTTATATATTTACTGTATAGTTTTAATGTTCATATAGATTGGTAGAATCACCTACCTATATTCAC

Downstream sequence

TAGATATTTTTAGTGTTAAAATATTAAACATTAACATTTGACTATATTCACCAGAATTTTTTAATGTCAGTGTAGAGTGTGTGATAGTGTCATCTGTAGA