VISDB Viral Integration Site DataBase

VIS ID

TVIS10009936

Fusion event

HBV-GALNT13 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|large S protein|middle S protein|

Start

149

Orient

+

Integrated sequence

TGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGC| |GCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTCTCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGT

Chromosome

chr2

Cytoband

q24.1

Reference genome

Start

End

155092202/154235689 (Hg38)

Orient

+

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-6868-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-1237-3p ; hsa-mir-561-3p

Nearest miRNA

hsa-mir-128-1/Upstream/2867278; hsa-mir-10b/Downstream/4951146;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/362284, chr2-CpG: 141/Downstream/461804

Upstream sequence

GTCTTTATTTTAATTAGTGTTATTAATATTCATTGACTGAGGTAGTAAAAGGCAACCACTGGCTCAATGAGCAGCAGTCCAACAAGTCATGCAAACTCCA

Downstream sequence

GTGTTGACAGCCTTTGTTTGGAGTCCTGAATGGATTGTGTCTATCTAAATCACTGTGTAATCATGGATCCTTTGTGATTTCACATTCTCATCTTATAGTC