VISDB Viral Integration Site DataBase

VIS ID

TVIS10009937

Fusion event

HBV-GALNT13 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1664

Orient

-

Integrated sequence

TCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGA| |CTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAA

Chromosome

chr2

Cytoband

q24.1

Reference genome

Start

End

155092211/154235698 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-129-5p ; hsa-mir-6868-3p ; hsa-mir-942-5p ; hsa-mir-130b-5p ; hsa-mir-1237-3p ; hsa-mir-561-3p

Nearest miRNA

hsa-mir-128-1/Upstream/2867287; hsa-mir-10b/Downstream/4951137;

Nearest TSS

Nearest CpG islands

None/Target, chr2-CpG: 135/Upstream/362293, chr2-CpG: 141/Downstream/461795

Upstream sequence

TTAATTAGTGTTATTAATATTCATTGACTGAGGTAGTAAAAGGCAACCACTGGCTCAATGAGCAGCAGTCCAACAAGTCATGCAAACTCCAGTGTTGACA

Downstream sequence

GCCTTTGTTTGGAGTCCTGAATGGATTGTGTCTATCTAAATCACTGTGTAATCATGGATCCTTTGTGATTTCACATTCTCATCTTATAGTCAATTTTTAT