Basic Information
VIS ID
TVIS10009956
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1808
Orient
-
Integrated sequence
TTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCAC| |CAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGAC
Host Sequence
Chromosome
chr2
Cytoband
p12
Reference genome
GRCh37/hg19
Start
76167355/75940229 (Hg38)
End
76167355/75940229 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/849315; hsa-mir-10b/Downstream/3709065;
Nearest TSS
ENST00000437798/Upstream/221109; ENST00000445178/Downstream/1045736;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/229216, chr2-CpG: 32/Downstream/3052837
Nearby gene
GCFC2(-229244) ; LRRTM4(+807495) ;
Upstream sequence
atatgctttagttctgtgtcacacccaaactcatctcgaattgccacgtataaagggagggacctggtgggaggtgactggatcatgggagtgtatttcc
Downstream sequence
cttttgctgttctcatgatagtgagtgagttctcacgagatctggttgtttgataaatgtctggtgcttccccctctctcctgccaccatgtaagacacg
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate