Basic Information
VIS ID
TVIS10009959
Fusion event
HBV-NOL4L integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|middle S protein|
Start
3210
Orient
-
Integrated sequence
CGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG| |
Host Sequence
Chromosome
chr20
Cytoband
q11.21
Reference genome
GRCh37/hg19
Start
31087682/32499879 (Hg38)
End
31087682/32499879 (Hg38)
Orient
+
Location type
Intronic
Target gene
NOL4L
miRNAs that regulate target gene
hsa-mir-15a-5p ; hsa-mir-16-5p ; hsa-mir-15b-5p ; hsa-mir-195-5p ; hsa-mir-32-5p ; hsa-mir-92b-3p ; hsa-mir-92a-3p
Nearest miRNA
hsa-mir-103a-2/Upstream/262032; hsa-mir-1-1/Downstream/1549240;
Nearest TSS
ENST00000382410/Upstream/16297; ENST00000620523/Downstream/10080;
Nearest CpG islands
None/Target, chr20-CpG: 39/Upstream/15006, chr20-CpG: 103/Downstream/36307
Upstream sequence
AAGTAATGCCTTTTTTCAagccagcaaaacttttaaaaagaaagccaacaaaagaggaacaattcctactagatattaaaacatatgataaagttttcac
Downstream sequence
acttaaaacagtttggtagctgctacatgaatagtcaaggagcccagtggaccaaacagaagtagattctgttttggatggaaacttagtaagttttaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate