Basic Information
VIS ID
TVIS10009980
Fusion event
HBV-chr3 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
543
Orient
-
Integrated sequence
TCTTCTGGACTATCAAGGTATGTTGCCCGTTTGTCCTCTAATTCCAGGATCCTCAACAACCAGCACGGGACCATGCCGGACCTGCATGACTACTGCTCAA| |GGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTAT
Host Sequence
Chromosome
chr3
Cytoband
q13.13
Reference genome
GRCh37/hg19
Start
110427350/110708503 (Hg38)
End
110427350/110708503 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-let-7g/Upstream/1105606; hsa-mir-12124/Downstream/1404298;
Nearest TSS
ENST00000440867/Upstream/178921; ENST00000478327/Downstream/184709;
Nearest CpG islands
None/Target, chr3-CpG: 148/Upstream/1590261, chr3-CpG: 105/Downstream/362799
Nearby gene
LINC01205(-1213336) ; NECTIN3-AS1(+336813) ;
Upstream sequence
TATCCACTTGTAGACCCTTTACCTTTCTATATTATCTCTTAATGGCCTCATCTGCTCACGTAAATAACTTAAAATTTAATCTCTACATTTAAAGGAAGAC
Downstream sequence
ggtgacacaagcactcctgtggctaccaccaatgggactgtgctgggttagaactgaagtcagcacagcactgggtcttactcaagacccactgaaacca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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