Basic Information
VIS ID
TVIS10009994
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
345
Orient
-
Integrated sequence
GAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTACCGTGTGTCTTGGCCAAAATTCGCAGTCCCCAACCTCCAATCACTCACCAACC| |TCTTGTCCTCCAACTTGTCCTGGTTATCGCTGGATGTGTCTGCGGCGTTTTATCATCTTCCTCTTCATCCTGCTGCTATGCCTCATCTTCTTGTTGGTTC
Host Sequence
Chromosome
chr4
Cytoband
q26
Reference genome
GRCh37/hg19
Start
117438735/116517579 (Hg38)
End
117438735/116517579 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1860725; hsa-mir-1305/Downstream/8989680;
Nearest TSS
ENST00000502981/Upstream/2433; ENST00000420701/Downstream/567997;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1917803, chr4-CpG: 21/Downstream/81696
Nearby gene
MIR1973(-217811) ; TRAM1L1(+565975) ;
Upstream sequence
ttgtaataaccaccaaagaagttcgcttcttcaatgtcctattctctagttccatgtctccattttgcctacaggaatattttgtgaaactttgttaaat
Downstream sequence
ctgaatcaattttctcccactggacccatcccacaacatgtgggaattatgggagatacaatttaagatgagatttgggtgaggacacagccaaaccaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate