Basic Information
VIS ID
TVIS10010046
Fusion event
HBV-chr8 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
2928
Orient
+
Integrated sequence
CTTGGGAACAAGATCTACAGCATGGGGCAGAATCTTTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACA| |CCGCAAATCCAGATTGGGACTTCAATCCCAACAAGGACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCA
Host Sequence
Chromosome
chr8
Cytoband
q24.11
Reference genome
GRCh37/hg19
Start
117841728/116829489 (Hg38)
End
117841728/116829489 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12123/Upstream/4185906; hsa-mir-10400/Downstream/45239;
Nearest TSS
ENST00000518652/Upstream/59299; ENST00000521487/Downstream/19994;
Nearest CpG islands
None/Target, chr8-CpG: 109/Upstream/62582, chr8-CpG: 81/Downstream/44624
Nearby gene
UTP23(-54807) ; RAD21(+16445) ;
Upstream sequence
ATAATGAGTATAACTGAATGAAGGAATTTAAGACTAATTCTTTAATAACAAATATTTTATTCTGTTCATGACTCAAGTTTGGCTCCCTGGGTGTAGGCAT
Downstream sequence
atatacaggtactactattatCATATATTAATTTTTAATAGCCACTTTGgtatggtctaagagtagaggatcagtgttgagggaatgggcaaaatgtatc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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