Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010069
Fusion event
HBV-FAM157B integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
639
Orient
-
Integrated sequence
TCAAGGAACCTCTATGTATCCCTCCTGTTGCTGTACCAAACCTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTC| |CTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTTACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTA
Host Sequence
Chromosome
chr9
Cytoband
q34.3
Reference genome
End
141127813/138237363 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-let-7a-1/Upstream/398847;
Nearest TSS
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/16223, None/Downstream
Upstream sequence
AAAGGATAACATACCATGAAGGTATAGGCTAAGCCTAGCCAAGAGGTGGGCTACAAATAAGATTTTTAATGTTGGGGGAAGGTCAATTTACCACTATGTG
Downstream sequence
taggattagggttaggattaggggttagggttagggttagggtACTGTAAATAATTTCACATTATTACTAATAATAAATTATTATTTGTATTACACTATT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.