Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010084
Fusion event
HBV-CSF2RA integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1803
Orient
-
Integrated sequence
CATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTG| |CGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCA
Host Sequence
Chromosome
chrY
Cytoband
p11.2
Reference genome
Start
End
1370617/1301724 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-3690-2/Upstream/7732; hsa-mir-12120/Downstream/1307467;
Nearest TSS
Nearest CpG islands
None/Target, chrY-CpG: 62/Upstream/7114, chrY-CpG: 27/Downstream/50450
Upstream sequence
gttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggttagggtga
Downstream sequence
tagctgggactacaggtgcccatcaccacgcctggctaattttttgtatttttttttttttagtagagacagggtttcactgttttttagccaggatggt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.