VISDB Viral Integration Site DataBase

VIS ID

TVIS10010105

Fusion event

HBV-NFASC integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1789

Orient

-

Integrated sequence

GACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGG| |CATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGG

Chromosome

chr1

Cytoband

q32.1

Reference genome

Start

End

204844523/204875395 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-8082 ; hsa-mir-6811-5p ; hsa-mir-6511b-5p ; hsa-mir-6887-5p ; hsa-mir-6795-5p ; hsa-mir-7111-5p ; hsa-mir-6870-5p ; hsa-mir-4723-5p ; hsa-mir-5698 ; hsa-mir-939-5p ; hsa-mir-1343-5p ; hsa-mir-6726-5p ; hsa-mir-920 ; hsa-mir-5591-5p ; hsa-mir-4300 ; hsa-mir-8059 ; hsa-mir-4471 ; hsa-mir-1292-5p ; hsa-mir-6722-3p ; hsa-mir-4327 ; hsa-mir-1909-3p ; hsa-mir-6836-5p ; hsa-mir-6132 ; hsa-mir-4487 ; hsa-mir-4646-5p ; hsa-mir-204-3p ; hsa-mir-6798-5p ; hsa-mir-7851-3p ; hsa-mir-490-3p ; hsa-mir-4290 ; hsa-mir-6825-5p ; hsa-mir-423-5p ; hsa-mir-3184-5p ; hsa-mir-5695 ; hsa-mir-342-3p ; hsa-mir-7113-5p ; hsa-mir-1228-3p ; hsa-mir-4640-3p ; hsa-mir-6893-3p ; hsa-mir-370-3p ; hsa-mir-1296-5p ; hsa-mir-2909 ; hsa-mir-4656 ; hsa-mir-3158-3p ; hsa-mir-4446-3p ; hsa-mir-5088-5p ; hsa-mir-4496 ; hsa-mir-140-3p ; hsa-mir-497-3p ; hsa-mir-181b-3p

Nearest miRNA

hsa-mir-101-1/Upstream/2872159; hsa-mir-1182/Downstream/572907;

Nearest TSS

Nearest CpG islands

None/Target, chr1-CpG: 111/Upstream/189638, chr1-CpG: 15/Downstream/106459

Upstream sequence

TGGGAGGCACTGAAGGGAAGATGGGAGACCCCAGCCTTCCACTGTTTTCCACTGGTCTAACCTCCAGGTTAGACCAGGAGCCTGGCAACACTACTGAGGC

Downstream sequence

TGTCTGCCTCCCAGAAGTCACATGTGCCTAAGAGGTGACTATATTTTGCTGGAGGAAGTGGAAAGAAGAACAGAGTAGGGAATCTGGAGGTGCCTGAGTC