VISDB Viral Integration Site DataBase

VIS ID

TVIS10010109

Fusion event

HBV-PCGF6 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|

Start

1731

Orient

-

Integrated sequence

ACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGA| |CTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACC

Chromosome

chr10

Cytoband

q24.33

Reference genome

Start

End

105109810/103350053 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

FRA10D ; FRA10A ; FRA10B

Target gene

miRNAs that regulate target gene

hsa-mir-24-3p ; hsa-mir-203a-3p ; hsa-mir-4733-5p ; hsa-mir-6776-3p

Nearest miRNA

hsa-mir-107/Upstream/913469; hsa-mir-1307/Downstream/44200;

Nearest TSS

Nearest CpG islands

None/Target, chr10-CpG: 68/Upstream/71726, chr10-CpG: 77/Downstream/455

Upstream sequence

cgccttgtagtcccagctactctaaaggctgaggctggagaatcgcttgaacctgggaggcggaggttgcagtgagccgagatcgcgccactgcactcca

Downstream sequence

gcctgggcgacagagcgagactccgtctcaaaaacaaaacaaaacaaaacaaaacaaaaGGATCTTTACTGCCTAGTAAGCAGTAGCTTCAATAATTATA