Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010190
Fusion event
HBV-DNAH7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|Core and e antigen|
Start
2129
Orient
+
Integrated sequence
AGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTT| |GGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACT
Host Sequence
Chromosome
chr2
Cytoband
q32.3
Reference genome
End
196778842/195914118 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/6781007; hsa-mir-1244-1/Downstream/10869116;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/255892, chr2-CpG: 34/Downstream/154468
Upstream sequence
TCTTTTATTAACCATTTCCTTCTCAAAGCATTCCCCCATGAATTTCCATTCCCCTATGAATTTCCATTCCCCTCTGGATTAATATATctgtagcacctaa
Downstream sequence
tgtttacctctaatatttcactcagtacactgtattgtaattgttttttaaactgactttcccatctgactgaaaaatgtttaaatacagaaactctata
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.