Basic Information
VIS ID
TVIS10010229
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1573
Orient
-
Integrated sequence
GCTTGGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCC| |GGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGAC
Host Sequence
Chromosome
chr4
Cytoband
q32.2
Reference genome
GRCh37/hg19
Start
161907553/160986401 (Hg38)
End
161907553/160986401 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-12113/Upstream/1857507; hsa-mir-1305/Downstream/2107173;
Nearest TSS
ENST00000502981/Upstream/447147; ENST00000508189/Downstream/392552;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1882418, chr4-CpG: 71/Downstream/2179908
Nearby gene
RAPGEF2(-1626252) ; FSTL5(+397491) ;
Upstream sequence
acctggctaatttttgtatttttaatagagacggagtttcaccatcttggccaggctggtcttgaactcctgacctcaagtgatccacctgccttggcat
Downstream sequence
TCTCAGTTCAATGATGTATGTTGCTAAGCTAAGACACCTTCACCAAATGTTCAAATAAAGGGGAGAAACTATGATTTTACAACTTTGTATTTAGTGCAGG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate