Basic Information
VIS ID
TVIS10010233
Fusion event
HBV-chr4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2068
Orient
+
Integrated sequence
TTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCA| |GGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGT
Host Sequence
Chromosome
chr4
Cytoband
p16.3
Reference genome
GRCh37/hg19
Start
3712090/3710363 (Hg38)
End
3712090/3710363 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-4800/Upstream/1460207; hsa-mir-12113/Downstream/2212912;
Nearest TSS
ENST00000502981/Upstream/32508; ENST00000509482/Downstream/53027;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/40558, chr4-CpG: 23/Downstream/30002
Nearby gene
LINC02171(-32508) ; ADRA2C(+56206) ;
Upstream sequence
ttccattccattccattccattccattccattccattccattccattccattagtttctaatcgggtgattccaatccattccattatattcaagtcctt
Downstream sequence
TGCTGCCCTGTAACCATGTATCCAGCACTTGGGACACCCAGAGGGATCAGACTGGACCCATCCCTGCTTCTAGGAGCCCCACCTAGAACACTCACCCAGG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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