Basic Information
VIS ID
TVIS10010244
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|Polymerase|
Start
2354
Orient
+
Integrated sequence
ATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACTGTTGTTAGACG| |ACGAGGCAGGTCCCCTAGAAGAAGAACTCCCTCGCCTCGCAGACGAAGGTCTCAATCGCCGCGTCGCAGAAGATCTCAATCTCGGGAATCTCAATGTTAG
Host Sequence
Chromosome
chr5
Cytoband
q12.3
Reference genome
GRCh37/hg19
Start
65202974/65907146 (Hg38)
End
65202974/65907146 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/6203443; hsa-mir-103a-1/Downstream/6262321;
Nearest TSS
ENST00000502646/Upstream/88425; ENST00000507490/Downstream/17989;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/184461, chr5-CpG: 158/Downstream/17785
Nearby gene
NLN(-77863) ; ERBIN(+19408) ;
Upstream sequence
aatctggccccagccatctctccagcctcatttctgGTGACTCCCAGATCTGGCCCCAGCCATGTCTCTAGACTCCAAACTTATTCCTTATAATGCTCCC
Downstream sequence
GGGCTTAACAAGGAGAGTGGAAGATATTCTCAGTGTCAAATATTTTGGACTCTATGAGGGTCAAGAATGTGGGAGGTGgtttgtttgtttgtttgtttgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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