Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010259
Fusion event
HBV-LMBRD1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1801
Orient
-
Integrated sequence
GGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTC| |TGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGG
Host Sequence
Chromosome
chr6
Cytoband
q13
Reference genome
Start
End
70413691/69703799 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-10398/Upstream/12313587; hsa-mir-10524/Downstream/1673161;
Nearest CpG islands
None/Target, chr6-CpG: 120/Upstream/1068645, chr6-CpG: 53/Downstream/92601
Upstream sequence
ctgaaactgcatcccttccttacaccttatacaaaaattaattcgagatggattaaagacttaaatgttagacctaaaaccataaaaaccctagaagaaa
Downstream sequence
attccactatacacttcactcatattctccaaattttaacatgttaccttatcattctctTTTGAACAAGTCTTAATTATTATATATCAATTTCTCTTGA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.