Basic Information
VIS ID
TVIS10010267
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1870
Orient
+
Integrated sequence
TGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAG| |CCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTT
Host Sequence
Chromosome
chr7
Cytoband
q36.2
Reference genome
GRCh37/hg19
Start
153043479/153346394 (Hg38)
End
153043479/153346394 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA7I
Nearest miRNA
hsa-mir-10399/Upstream/1912755; hsa-mir-153-2/Downstream/4227942;
Nearest TSS
ENST00000635602/Upstream/535652; ENST00000462622/Downstream/65840;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/420174, chr7-CpG: 87/Downstream/401685
Nearby gene
ACTR3B(-491015) ; DPP6(+540940) ;
Upstream sequence
GTCTACAGCATTTAGTGATGAAGATGATCATGTTCCTTTGAATTTGCATAGAGGCTCCAAGGCACATTCACATACCTGAtctcttttttttttttttttt
Downstream sequence
TGGATGTCGTTAAAAAGTGCTGAGTGTTAAAGGCATTGTGCTTCTCAAATGTTCTTGCTTTTATCTAAGACCCTTTGCGGCATCCAAAACAACGGGTAAC
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate