Basic Information
VIS ID
TVIS10010270
Fusion event
HBV-chr7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2004
Orient
+
Integrated sequence
GGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGTTACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCC| |TCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTC
Host Sequence
Chromosome
chr7
Cytoband
p22.1
Reference genome
GRCh37/hg19
Start
5282073/5242442 (Hg38)
End
5282073/5242442 (Hg38)
Orient
+
Location type
Intergenic
Fragile sites / regions
FRA7B
Nearest miRNA
hsa-mir-339/Upstream/453803; hsa-mir-10399/Downstream/253377;
Nearest TSS
ENST00000635602/Upstream/13034; ENST00000434816/Downstream/31927;
Nearest CpG islands
None/Target, chr7-CpG: 39/Upstream/13963, chr7-CpG: 116/Downstream/40451
Nearby gene
WIPI2(-8587) ; SLC29A4(+40488) ;
Upstream sequence
tcaaactatactacaaggctacaataaccaaaacagacatatagaccaatggatcagaacagagacctcagaatcacaccacacatctacatccatgtga
Downstream sequence
ggcacgagaatcgcttcaacccaggaagcggagattgcagcgagttaagatcgcacccctacactccagcctgggtaacagagtgagactctgtcagaaa
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate