Basic Information
VIS ID
TVIS10010293
Fusion event
HBV-chr9 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|Core and e antigen|
Start
2138
Orient
+
Integrated sequence
AGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGAAGATCC| |AGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGA
Host Sequence
Chromosome
chr9
Cytoband
q32
Reference genome
GRCh37/hg19
Start
117082116/114319836 (Hg38)
End
117082116/114319836 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA9E
Nearest miRNA
hsa-let-7a-1/Upstream/110307; hsa-mir-12126/Downstream/5925143;
Nearest TSS
ENST00000422679/Upstream/12804; ENST00000477456/Downstream/3220;
Nearest CpG islands
None/Target, chr9-CpG: 64/Upstream/151748, chr9-CpG: 80/Downstream/78023
Nearby gene
COL27A1(-9141) ; ORM1(+3187) ;
Upstream sequence
ATTACAAATTTGTCTTAGCTATTAGCAAATAAAACTGATTATCATTCTTTATTAACCCTCCTTGGAATTTTGAAAACCTCGATTAAAGTTGCCAAATTGA
Downstream sequence
cactgatctgatttctaaaattatagatttgtttgagctgttctagaacagaaccgtacagtatataagctcctttgtatctggcttcttttgttcagca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate