Basic Information
VIS ID
TVIS10010311
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1639
Orient
-
Integrated sequence
ACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATA| |TTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGG
Host Sequence
Chromosome
chr1
Cytoband
p31.3
Reference genome
GRCh37/hg19
Start
62651147/62185475 (Hg38)
End
62651147/62185475 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA1L
Nearest miRNA
hsa-mir-12132/Upstream/106616; hsa-mir-101-1/Downstream/1141450;
Nearest TSS
ENST00000473358/Upstream/64601; ENST00000498273/Downstream/9356;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/442329, chr1-CpG: 33/Downstream/9408
Nearby gene
PATJ(-21556) ; L1TD1(+9327) ;
Upstream sequence
gttcaagactagactgggcaacatagtgagacctcatctctaaTTTAAAGAATGAggccaggcacggtggctcacatttgtattcctagcactttgggat
Downstream sequence
gccaaggcaggtggatcacttgaggtcaggagttcgagaccatcctggccaacatggtgaaaccccgtctctaccaaaactacaaaaattagctgtgcat
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate