Basic Information
VIS ID
TVIS10010332
Fusion event
HBV-HECTD4 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|large S protein|middle S protein|
Start
26
Orient
+
Integrated sequence
AATTCCACAACCTTCCACCAAACTCT| |GCAAGATCCCAGAGTGAGAGGCCTGTATTTCCCTGCTGGTGGCTCCAGTTCAGGAACAGTAAACCCTGTTCTGACTACTGCCTCTCCCTTATCGTCAATC
Host Sequence
Chromosome
chr12
Cytoband
q24.13
Reference genome
End
112782636/112344832 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-let-7i/Upstream/181511; hsa-mir-1178/Downstream/350202;
Upstream sequence
acatggtgaaaccccgtctctattaaaaatataaaataagccaggcgtggtggcgcatgcctgtaatcccagctatttgggaggctgaggcaggaggact
Downstream sequence
gcttgaacctgggagatacaggttgcagtgagctgagatcacgccattgcactccagcctgggcaatgagaatgaaactccgtctcaaaaaaagaaaaga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate