Basic Information
VIS ID
TVIS10010351
Fusion event
HBV-LOC105369617 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
2964
Orient
-
Integrated sequence
TCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAGG| |ACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGG
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
5429992/5320826 (Hg38)
End
5429992/5320826 (Hg38)
Orient
+
Location type
Intronic
Target gene
LOC105369617
Nearest miRNA
hsa-mir-3649/Upstream/3660446; hsa-let-7i/Downstream/1642873;
Nearest TSS
ENST00000382841/Upstream/4865; ENST00000537714/Downstream/46948;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/177422, chr12-CpG: 56/Downstream/109903
Nearby gene
KCNA5(-274038) ; NTF3(+111288) ;
Upstream sequence
tcctctaagaactgaacaagataaggatgcccactttcaccactcatattcaaaatagtactggaagtcctaacaaaagcaattaggcaaaagaaataaa
Downstream sequence
gaacatccaaattggaaagagtgaagtagaattgcacctgtttgcagataacatcatcttatatgtagaaaaacctaaagatttcaacaaaaaactctta
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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