Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010356
Fusion event
HBV-ANO2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
precore/core protein|Core and e antigen|
Start
2132
Orient
+
Integrated sequence
CTCCTGAGCATTGTTCACCTCACCATACTGCACTCAGGCAAGCAATTCTTTGCTGGGGGGAACTAATGACTCTAGCTACCTGGGTGGGTGTTAATTTGGA| |AGATCCAGCGTCTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTT
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
Start
End
5967300/5858134 (Hg38)
Orient
-
Location type
Intronic
Target gene
miRNAs that regulate target gene
Nearest miRNA
hsa-mir-3649/Upstream/4197754; hsa-let-7i/Downstream/1105565;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/30215, chr12-CpG: 46/Downstream/87049
Upstream sequence
aggggaggatggggagaggttggttaatggatccaaagttaagctagataggaggaataccttccagtgttctgcagcactgcagggtgaataggattaa
Downstream sequence
tataatttattgtatgtttccaaaaagttagaagagaggattgtgaatatttacaacacaaagaaatgatatattaggggtgacagatacgctaactacc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.