Basic Information
VIS ID
TVIS10010360
Fusion event
HBV-chr12 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3070
Orient
-
Integrated sequence
GGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACT| |ACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCAGCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAG
Host Sequence
Chromosome
chr12
Cytoband
p13.31
Reference genome
GRCh37/hg19
Start
7605105/7452509 (Hg38)
End
7605105/7452509 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-141/Upstream/488318; hsa-let-7i/Downstream/1786958;
Nearest TSS
ENST00000382841/Upstream/8324; ENST00000345088/Downstream/19427;
Nearest CpG islands
None/Target, chr12-CpG: 104/Upstream/12075, chr12-CpG: 23/Downstream/175898
Nearby gene
CD163L1(-8356) ; CD163(+18307) ;
Upstream sequence
TATATTTGAAATTGAGAAGAAGTGCAAAAATACAGAAAGTGTGCCAAATGGCATGTTTCCACAAGAGAGTTGCTTTGTAGACTTAAATGTCAGAGAAGCG
Downstream sequence
TGTTTGTAATACCTGGATACTAAGAAAGGATTAAAAATCAATTTTCACCTTTCATCTGgatgtcagcaagacggcacaatacagctttccaacgctggct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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