VISDB Viral Integration Site DataBase

VIS ID

TVIS10010396

Fusion event

HBV-LIPG integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

Polymerase|

Start

2641

Orient

+

Integrated sequence

TTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCACTCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATG| |CCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTATTATCCAGAACATCTAGTTAATCATTACTTCCAAACTA

Chromosome

chr18

Cytoband

q21.1

Reference genome

Start

End

47105443/49579073 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-335-5p ; hsa-mir-2909 ; hsa-mir-4278 ; hsa-mir-6789-5p ; hsa-mir-6824-5p ; hsa-mir-6813-5p ; hsa-mir-6085 ; hsa-mir-4688 ; hsa-mir-6743-5p ; hsa-mir-5197-3p ; hsa-mir-4446-5p ; hsa-mir-5006-3p ; hsa-mir-4755-5p ; hsa-mir-623 ; hsa-mir-31-5p ; hsa-mir-6832-3p ; hsa-mir-4436b-5p ; hsa-mir-6509-3p ; hsa-mir-6777-3p ; hsa-mir-4495 ; hsa-mir-548f-3p ; hsa-mir-548e-3p ; hsa-mir-548az-3p ; hsa-mir-548ar-3p ; hsa-mir-548a-3p ; hsa-mir-5096 ; hsa-mir-3187-3p ; hsa-mir-4435 ; hsa-mir-588 ; hsa-mir-4701-5p ; hsa-mir-548s ; hsa-mir-197-3p ; hsa-mir-411-5p ; hsa-mir-6832-5p ; hsa-mir-4524a-3p ; hsa-mir-6823-5p ; hsa-mir-4524b-3p ; hsa-mir-640 ; hsa-mir-378a-5p ; hsa-mir-6778-3p ; hsa-mir-6821-3p ; hsa-mir-6790-3p ; hsa-mir-3653-5p ; hsa-mir-150-5p ; hsa-mir-372-5p ; hsa-mir-371a-5p ; hsa-mir-616-5p ; hsa-mir-373-5p ; hsa-mir-371b-5p ; hsa-mir-7107-5p ; hsa-mir-1234-3p ; hsa-mir-1224-3p ; hsa-mir-3934-5p ; hsa-mir-764 ; hsa-mir-125a-3p ; hsa-mir-6848-3p ; hsa-mir-6843-3p ; hsa-mir-6131 ; hsa-mir-3663-5p ; hsa-mir-24-3p ; hsa-mir-4284 ; hsa-mir-564 ; hsa-mir-4330 ; hsa-mir-342-3p ; hsa-mir-589-3p ; hsa-mir-1228-3p ; hsa-mir-216b-5p ; hsa-mir-216a-5p ; hsa-mir-1273e ; hsa-mir-194-3p ; hsa-mir-25-5p ; hsa-mir-34b-3p ; hsa-mir-3614-5p ; hsa-mir-377-5p ; hsa-mir-4459 ; hsa-mir-455-3p ; hsa-mir-4640-5p ; hsa-mir-4695-5p ; hsa-mir-4726-5p ; hsa-mir-5694 ; hsa-mir-6086 ; hsa-mir-6087 ; hsa-mir-6499-3p ; hsa-mir-6500-3p ; hsa-mir-6508-3p ; hsa-mir-6516-5p ; hsa-mir-658 ; hsa-mir-665 ; hsa-mir-6840-3p

Nearest miRNA

hsa-mir-1-2/Upstream/91651; hsa-mir-122/Downstream/547426;

Nearest TSS

Nearest CpG islands

None/Target, chr18-CpG: 67/Upstream/16915, chr18-CpG: 60/Downstream/233968

Upstream sequence

ttcggctccacatgagagggagaccgtggggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggaga

Downstream sequence

gggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagagggagaggga