Basic Information
VIS ID
TVIS10010405
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|precore/core protein|
Start
1825
Orient
-
Integrated sequence
TAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTT| |TTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGA
Host Sequence
Chromosome
chr2
Cytoband
q21.2
Reference genome
GRCh37/hg19
Start
134840933/134083362 (Hg38)
End
134840933/134083362 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2S
Nearest miRNA
hsa-mir-1285-2/Upstream/1649542; hsa-mir-10b/Downstream/43763;
Nearest TSS
ENST00000437798/Upstream/514899; ENST00000488365/Downstream/36621;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/73242, chr2-CpG: 176/Downstream/36474
Nearby gene
NCKAP5(-514902) ; MIR3679(+43763) ;
Upstream sequence
gctgtgaaccacagggttccaggccctggatgctgggtggaaagctgacgcgaccccatgccctacggagcttatattctcagggtgtgggcaggataaa
Downstream sequence
cgaataagcaaagaagagagtttgaaagatagtgctaagaaggaaataacacacagagaggtgagtaagtggtcagatgggtgcccaagtgagacaggga
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate