hsa-mir-4434 _LIHC.png
SETDB1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010520
Fusion event
HBV-SETDB1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|
Start
1774
Orient
-
Integrated sequence
CTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTA| |CTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTC
Host Sequence
Chromosome
chr1
Cytoband
q21.3
Reference genome
End
150924716/150952240 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
Target gene
Nearest miRNA
hsa-mir-101-1/Upstream/400226; hsa-mir-1182/Downstream/593556;
Nearest cancer related gene
SETDB1(OG, No orient, 0)
Upstream sequence
tctgccttaaaaaaaaaaaaagaaaagttagaatcaaattcatggtgctcttacaggattttaagctgccaagtgatgtgacctgcctttttcagattac
Downstream sequence
tctggcttctttgtagatcataggtcttaggatggcaaaagtagattttggaagaccaattaggagatcgttataggagtacagcagagagagacattgt
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate