Basic Information
VIS ID
TVIS10010525
Fusion event
HBV-chr1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
2963
Orient
-
Integrated sequence
TTCCACCAGCAATCCTCTGGGATTCTTTCCCGACCACCAGTTGGATCCAGCCTTCAGAGCAAACACCGCAAATCCAGATTGGGACTTCAATCCCAACAAG| |GACACCTGGCCAGACGCCAACAAGGTAGGAGCTGGAGCATTCGGGCTGGGTTTCACCCCACCGCACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGG
Host Sequence
Chromosome
chr1
Cytoband
q31.1
Reference genome
GRCh37/hg19
Start
186278438/186309306 (Hg38)
End
186278438/186309306 (Hg38)
Orient
+
Location type
ncRNA_intronic
Fragile sites / regions
FRA1K
Target gene
MIR548F1 ; RNU6-72P
Nearest miRNA
hsa-mir-101-1/Upstream/5870916; hsa-mir-1182/Downstream/6407022;
Nearest TSS
ENST00000473358/Upstream/13027; ENST00000574641/Downstream/13395;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/992072, chr1-CpG: 69/Downstream/65686
Upstream sequence
ATGCCTTAGTTTAGTATCACTCAACTGAGATATATTACCTGACCTTGTTAGCTTGTGAAGTTTTACAGCTTCCCTGTAGGTAAGCAGAGGTGTAATTACA
Downstream sequence
GTAAGCTTTTTCATTCTCTAGAAAATTAAGCCTGGGAATTTAGCATATGTGTGTCTGTGAGCAGCAGAGATGGTATATAGAAAGTCAAAAAAATTTAGTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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