LRRC7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010542
Fusion event
HBV-LRRC7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|large S protein|
Start
3127
Orient
-
Integrated sequence
ACGGAGGCCTTTTGGGGTGGAGCCCTCAGGCTCAGGGCATACTACAAACTTTGCCAGCAAATCCGCCTCCTGCCTCCACCAATCGCCAGTCAGGAAGGCA| |GCCTACCCCGCTGTCTCCACCTTTGAGAAACACTCATCCTCAGGCCATGCAGTGG
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
70162627/69696944 (Hg38)
End
70162627/69696944 (Hg38)
Orient
+
Location type
Intronic
Fragile sites / regions
FRA1C ; FRA1L
Target gene
LRRC7
Nearest miRNA
hsa-mir-101-1/Upstream/1513334; hsa-mir-11399/Downstream/1370687;
Nearest TSS
ENST00000473358/Upstream/128494; ENST00000415775/Downstream/63231;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/128132, chr1-CpG: 17/Downstream/222416
Nearby gene
DEPDC1(-1199828) ; LRRC7(+63231) ;
Upstream sequence
ccagaagcagatgctggcaccacacttcttgtacagcccacagaaccataagccaaaataaacctcttttctttataaattacccagcttcaggtattcc
Downstream sequence
tttatatgaatgcaaatggactaacacaTCTGATAATAGCTGAAACATCTGCTTTTCTACCTTCCTTTTTAAGATCAATCAGATCTGGGTCTATCCTTTT
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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