LRRC7 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010544
Fusion event
HBV-LRRC7 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1720
Orient
+
Integrated sequence
CGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAAGACTGT| |TTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCA
Host Sequence
Chromosome
chr1
Cytoband
p31.1
Reference genome
GRCh37/hg19
Start
70162923/69697240 (Hg38)
End
70162923/69697240 (Hg38)
Orient
-
Location type
Intronic
Fragile sites / regions
FRA1C ; FRA1L
Target gene
LRRC7
Nearest miRNA
hsa-mir-101-1/Upstream/1513630; hsa-mir-11399/Downstream/1370391;
Nearest TSS
ENST00000473358/Upstream/128790; ENST00000415775/Downstream/62935;
Nearest CpG islands
None/Target, chr1-CpG: 111/Upstream/128428, chr1-CpG: 17/Downstream/222120
Nearby gene
DEPDC1(-1200124) ; LRRC7(+62935) ;
Upstream sequence
AATCTCTCTTTTCCTCCAAAGTAATCAACTAGTTTTTCTATTTTTTTATTTTTTTCCCACTTCTTCCGTTCTAATAAGAAAACTAAAACATGCCTCTTTC
Downstream sequence
ACACAACTGCAATTCCTCCTGGATATTTTACACAAACTCAATTCTTAAAATCCAGGTGCTCCAAACACAGCCTTTATTCTTTCTCTTCATAGCCTTTAAG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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