Basic Information
VIS ID
TVIS10010556
Fusion event
HBV-chr10 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
Polymerase|
Start
2603
Orient
-
Integrated sequence
ACTGTACCTGTCTTTAATCCTCATTGGAAAACACCATCTTTTCCTAATATACATTTACACCAAGACATTATCAAAAAATGTGAACAGTTTGTAGGCCCAC| |TCACAGTTAATGAGAAAAGAAGATTGCAATTGATTATGCCTGCCAGGTTTTATCCAAAGGTTACCAAATATTTACCATTGGATAAGGGTATTAAACCTTA
Host Sequence
Chromosome
chr10
Cytoband
p11.23
Reference genome
GRCh37/hg19
Start
30063845/29774916 (Hg38)
End
30063845/29774916 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1265/Upstream/172570; hsa-mir-107/Downstream/593681;
Nearest TSS
ENST00000439456/Upstream/38135; ENST00000375322/Downstream/239002;
Nearest CpG islands
None/Target, chr10-CpG: 68/Upstream/37768, chr10-CpG: 124/Downstream/283754
Nearby gene
SVIL(-39115) ; JCAD(+237884) ;
Upstream sequence
tcccagagctttgggaggctgaagtgggaggattgcttgaggttaggagtttcagaccagcccctgggcagcatagtgagaccccatctctataaaaaaa
Downstream sequence
ttttttttaatggctgggtgtgatggtgcatgtctgtagttccagctacttaggaggctaaggtgggaggatcccttgagcccaggagttagaggctgca
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate