Basic Information
VIS ID
TVIS10010640
Fusion event
HBV-chr14 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
S protein|Polymerase|large S protein|middle S protein|
Start
680
Orient
-
Integrated sequence
CTTCGGACGGAAATTGCACCTGTATTCCCATCCCATCATCCTGGGCTTTCGGAAAATTCCTATGGGAGTGGGCCTCAGCCCGTTTCTCCTGGCTCAGTTT| |ACTAGTGCCATTTGTTCAGTGGTTCGTAGGGCTTTCCCCCACTGTTTGGCTTTCAGTTATATGGATGATGTGGTATTGGGGGCCAAGTCTGTACAGCATC
Host Sequence
Chromosome
chr14
Cytoband
q31.3
Reference genome
GRCh37/hg19
Start
88242910/87776566 (Hg38)
End
88242910/87776566 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-1260a/Upstream/10510276; hsa-mir-1185-1/Downstream/6171660;
Nearest TSS
ENST00000550708/Upstream/42268; ENST00000555913/Downstream/34416;
Nearest CpG islands
None/Target, chr14-CpG: 35/Upstream/2242432, chr14-CpG: 87/Downstream/215986
Nearby gene
LINC01148(-853811) ; GALC(+156448) ;
Upstream sequence
atcccatttgtcaattttgacttttgctgccattgcttttggtgttttagacatgaagtccttgcccatgcctatgtcctgaatggtattgtctaggttt
Downstream sequence
tcttctagggtttttatggttttaggtctaacatttaagtctttaatccatcttgaattaatttttgtattaggtgtaaggaagggatccagtttcagct
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate