Basic Information
VIS ID
TVIS10010693
Fusion event
HBV-chr18 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
Polymerase|
Start
935
Orient
-
Integrated sequence
AAACCCTAACAAAACAAAGAGATGGGGTTACTCTCTAAATTTTATGGGTTATGTCATTGGATGTTATGGGTCCTTGCCACAAGAACACATCATACAAAAA| |ATCAAAGAATGTTTTAGAAAACTTCCTATTAACAGGCCTATTGATTGGAAAGTATGTCAACGAATTGTGGGTCTTTTGGGTTTTGCTGCCCCTTTTACAC
Host Sequence
Chromosome
chr18
Cytoband
q22.3
Reference genome
End
71276484/73609249 (Hg38)
Orient
-
Location type
Intergenic
Nearest miRNA
hsa-mir-1-2/Upstream/755867;
Nearby gene
LINC02582(-259360) ; FBXO15(+464104) ;
Upstream sequence
TGGAGATACAACATTTGTCAATAACTGCCAAATGCCAGATCTCTATTAGAATTAACACTTCATGAAAAGTATAATTTCATATGAAACATTTAGCAAGGGA
Downstream sequence
ATGAAAGCAAATGAAAAGTCAAGGTTAACAATGTAAAATTATGATACATTCAATCTCAGAGAAATATTAGAATCCATAGACAGATGAACTATTTGTATTA
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate