VISDB Viral Integration Site DataBase

VIS ID

TVIS10010697

Fusion event

HBV-ASF1B integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

X protein|Polymerase|

Start

1614

Orient

-

Integrated sequence

CCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGA| |GACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTCAGCAATGTCAACGACCGACCTTGAGGCATACTTCAAA

Chromosome

chr19

Cytoband

p13.12

Reference genome

Start

End

14247071/14136259 (Hg38)

Orient

-

Location type

Intronic

Fragile sites / regions

Target gene

miRNAs that regulate target gene

hsa-mir-193b-3p ; hsa-mir-26b-5p ; hsa-mir-214-3p ; hsa-mir-130b-5p ; hsa-mir-92b-3p ; hsa-mir-18a-3p ; hsa-mir-324-5p ; hsa-mir-3677-5p ; hsa-mir-3133

Nearest miRNA

hsa-mir-10395/Upstream/62780; hsa-let-7e/Downstream/393284;

Nearest TSS

Nearest CpG islands

chr19-CpG: 143/Target, None/Upstream, None/Downstream

Upstream sequence

CGTGTTGGCTGGTGGCGGGGGGTCTCCACCGGGAGATCCGGTTGACTGGCGGGCTGGGGGAGATCGGGGTTGGCGGAAGGGGGACGAGGGGTTTCATGGG

Downstream sequence

GGAGATCAAGTTGGCCATGGGAGCGGTTCTCTGAGGGGAGGCCGGGGTCGGCCCGGGGGTGGGGGTCCCCGCACAGGCCCAGCCTCACCGTCCGCCAGGG