FN1 _LIHC.png
Expression analysis of TCGA samples
Basic Information
VIS ID
TVIS10010735
Fusion event
HBV-FN1 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
Virus Sequence
Virus name
HBV
Reference genome
Region type
X protein|Polymerase|
Start
1483
Orient
-
Integrated sequence
TAGGCTGTGCTGCCAACTGGATCCTGCGCGGGACGTCCTTTGTTTACGTCCCGTCGGCGCTGAATCCTGCGGACGACCCTTCTCGGGGTCGCTTGGGACT| |CTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGACCGTGTG
Host Sequence
Chromosome
chr2
Cytoband
q35
Reference genome
End
216242416/215377693 (Hg38)
Orient
+
Location type
Intronic
Target gene
Nearest miRNA
hsa-mir-10b/Upstream/1619534; hsa-mir-1244-1/Downstream/2522820;
Upstream sequence
tgcttcctgtaaagcctgctggcctgtgggccaattaagcctcttttctttagaaattacccagtctccggtatttctttatagtaatgcaagaatggcc
Downstream sequence
taataTGCATTGTTAAGATATAGCAGAAGCCAGTGGGGTCTCCCCAAGCTTAGCTCTATGAAAACAAATTCTAACAAGTAGAGCATAAACTAGATGTCAG
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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