VISDB Viral Integration Site DataBase

VIS ID

TVIS10010781

Fusion event

HBV-FGF12 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

S protein|Polymerase|large S protein|middle S protein|

Start

193

Orient

-

Integrated sequence

GTTCTGACTACTGCCTCTCCCTTATCGTCAATCTTCTCGAGGATTGGGGACCCTGCGCTGAACATGGAGAACATCACATCAGGATTCCTAGGACCCCTTC| |TCGTGTTACAGGCGGGGTTTTTCTTGTTGACAAGAATCCTCACAATACCGCAGAGTCTAGACTCGTGGTGGACTTCTCTCAATTTTCTAGGGGGAACTAC

Chromosome

chr3

Cytoband

q29

Reference genome

Start

End

192356976/192639187 (Hg38)

Orient

+

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-4668-5p ; hsa-mir-3613-3p ; hsa-mir-590-5p ; hsa-mir-21-5p

Nearest miRNA

hsa-let-7g/Upstream/2809178; hsa-mir-3137/Downstream/2495319;

Nearest TSS

Nearest CpG islands

None/Target, chr3-CpG: 148/Upstream/123839, chr3-CpG: 116/Downstream/277333

Upstream sequence

cacacacccatgaagctggctcAACCCAGGACTAGTACAGCAACAACACTGAGCCTTTCTACATGCACTGGAAACATACTGTgatgaagactctgaagtt

Downstream sequence

gtatataaaaaggtgctcagcgtcattaataatccgggaaatgtaactcaaaaccacaatgagatatcacctcacacctatgaggatggctattaccaaa