Basic Information
VIS ID
TVIS10010799
Fusion event
HBV-IQCM integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
precore/core protein|
Start
1845
Orient
+
Integrated sequence
GGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGTCTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATC| |TCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGT
Host Sequence
Chromosome
chr4
Cytoband
q31.23
Reference genome
GRCh37/hg19
Start
150579895/149658743 (Hg38)
End
150579895/149658743 (Hg38)
Orient
-
Location type
Intronic
Target gene
IQCM
Nearest miRNA
hsa-mir-12113/Upstream/1876075; hsa-mir-1305/Downstream/2830584;
Nearest TSS
ENST00000502981/Upstream/504448; ENST00000505781/Downstream/7314;
Nearest CpG islands
None/Target, chr4-CpG: 46/Upstream/1212839, chr4-CpG: 161/Downstream/419355
Nearby gene
NR3C2(-1216223) ; DCLK2(+419531) ;
Upstream sequence
tccattccattccattccattccattccattccattccattccattccattcaattccattccattccattcctttccactcgggttgattccattccat
Downstream sequence
atggaattgtttccttgagttctttttcagacagttcactataatcatatagaaatgctactgatttttgtatgttgattttgtattgtgaaactttact
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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