VISDB Viral Integration Site DataBase

VIS ID

TVIS10010852

Fusion event

HBV-OTULIN integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

2243

Orient

-

Integrated sequence

CTAGAGACCTAGTAGTCAGTTATGTCAACACTAATATGGGCCTAAAGTTCAGGCAACTCTTGTGGTTTCACATTTCTTGTCTCACTTTTGGAAGAGAAAC| |AGTTATAGAGTATTTGGTGTCTTTCGGAGTGTGGATTCGCACTCCTCCAGCTTATAGACCACCAAATGCCCCTATCCTATCAACACTTCCGGAGACTACT

Chromosome

chr5

Cytoband

p15.2

Reference genome

Start

End

14669487/14669378 (Hg38)

Orient

-

Location type

Intronic

Target gene

miRNAs that regulate target gene

hsa-mir-29c-3p ; hsa-mir-155-5p ; hsa-mir-32-5p ; hsa-mir-96-5p ; hsa-mir-16-5p ; hsa-let-7a-5p ; hsa-mir-3190-5p ; hsa-mir-3675-3p ; hsa-mir-3926 ; hsa-mir-4684-5p ; hsa-mir-548aa ; hsa-mir-548ap-3p ; hsa-mir-548as-3p ; hsa-mir-548at-3p ; hsa-mir-548ay-3p ; hsa-mir-548c-3p ; hsa-mir-548s ; hsa-mir-548t-3p ; hsa-mir-6771-3p ; hsa-mir-6849-3p ; hsa-mir-1285-3p ; hsa-mir-196a-3p ; hsa-mir-3187-5p ; hsa-mir-3667-5p ; hsa-mir-371a-5p ; hsa-mir-371b-5p ; hsa-mir-372-5p ; hsa-mir-373-5p ; hsa-mir-451b ; hsa-mir-4696 ; hsa-mir-508-5p ; hsa-mir-5189-5p ; hsa-mir-612 ; hsa-mir-616-5p ; hsa-mir-6501-3p ; hsa-mir-6512-3p ; hsa-mir-661 ; hsa-mir-6720-5p ; hsa-mir-6860 ; hsa-mir-766-3p ; hsa-mir-939-3p

Nearest miRNA

hsa-mir-10397/Upstream/4191233; hsa-mir-103a-1/Downstream/156551;

Nearest TSS

Nearest CpG islands

None/Target, chr5-CpG: 87/Upstream/4272, chr5-CpG: 21/Downstream/201904

Upstream sequence

GGCCGCTGGCCTGATCCGGAGACCCAGGGCTGCCTCCAGGTCCGGACGCGGGGCGTCGGGCTCCGGGCACCACGAATGCCGGACGTGAAGGGGAGGACGG

Downstream sequence

AGGTAAATATTGTTTAATAGGAACTTGAAAATATACACTTTAAAATAATGCCATAGTGCAAAACTAAGTATTTTCTAACTAGGAATTGTTAGCATTTGGT