Basic Information
VIS ID
TVIS10010981
Fusion event
HBV-chr5 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Tumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|Polymerase|
Start
1577
Orient
-
Integrated sequence
GGGACTCTCTCGTCCCCTTCTCCGTCTGCCGTTCCGACCGACCACGGGGCGCACCTCTCTTTACGCGGACTCCCCGTCTGTGCCTTCTCATCTGCCGGAC| |CGTGTGCACTTCGCTTCACCTCTGCACGTCGCATGGAGACCACCGTGAACGCCCACCAAATATTGCCCAAGGTCTTACATAAGAGGACTCTTGGACTCTC
Host Sequence
Chromosome
chr5
Cytoband
q13.3
Reference genome
GRCh37/hg19
Start
75093621/75797796 (Hg38)
End
75093621/75797796 (Hg38)
Orient
+
Location type
Intergenic
Nearest miRNA
hsa-mir-10397/Upstream/2919133; hsa-mir-103a-1/Downstream/7042359;
Nearest TSS
ENST00000502646/Upstream/80315; ENST00000506257/Downstream/285376;
Nearest CpG islands
None/Target, chr5-CpG: 87/Upstream/80106, chr5-CpG: 30/Downstream/284277
Nearby gene
POC5(-80308) ; SV2C(+285684) ;
Upstream sequence
ccaggcagcaagtaagaacataggaaaatctttcctctgtccaagagaggcatataaaggagacaggagcttgaaattgagcttgaggttgttcatagga
Downstream sequence
tgggtttttggtttggatgtccttcctgtttgttagttttccttctaacagtcaggaccctcagctgcaggtctgttggagtttgctggaggtacactcc
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
Curate