VISDB Viral Integration Site DataBase

VIS ID

TVIS10011086

Fusion event

HBV-ABCC9 integration

Validated

No

Detection method

NGS

Data source

Curated

Sample type

Disease

Hepatocellular carcinoma (HCC)

Quality evaluation

Normal

Reported year

2018

PubMed ID

Virus name

HBV

Reference genome

Region type

precore/core protein|Core and e antigen|

Start

1945

Orient

+

Integrated sequence

TCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGGGCATGGACATCGACCCTTATAAAGAATTTGGAGCTACTGTGGAGT| |TACTCTCGTTTTTGCCTTCTGACTTCTTTCCTTCAGTACGAGATCTTCTAGATACCGCCTCAGCTCTGTATCGGGAAGCCTTAGAGTCTCCTGAGCATTG

Chromosome

chr12

Cytoband

p12.1

Reference genome

Start

End

21951331/21798397 (Hg38)

Orient

-

Location type

UTR3

Target gene

miRNAs that regulate target gene

hsa-mir-142-3p ; hsa-mir-4668-5p ; hsa-mir-514b-3p ; hsa-mir-514a-3p ; hsa-mir-3978 ; hsa-mir-6124 ; hsa-mir-3148 ; hsa-mir-890 ; hsa-mir-4511 ; hsa-mir-3133

Nearest miRNA

hsa-mir-1244-3/Upstream/4125003; hsa-let-7i/Downstream/2414024;

Nearest TSS

Nearest CpG islands

None/Target, chr12-CpG: 104/Upstream/23340, chr12-CpG: 90/Downstream/142623

Upstream sequence

atttctccacatcctctccagcacctgttgtttcctgactttttaatgattgccattctaactggtgtgagatgatatctcatagtggttttgatttgca

Downstream sequence

tttctctgatggccagtgatgatgagcattttttcatgtgttttttggctgcataaatgtcttcttttgagaagtgtctgttcatgtccttcacccactt