Basic Information
VIS ID
TVIS10011107
Fusion event
HBV-chr2 integration
Validated
No
Detection method
NGS
Data source
Curated
Sample type
Nontumor
Disease
Hepatocellular carcinoma (HCC)
Quality evaluation
Normal
Reported year
2018
PubMed ID
30271481
Virus Sequence
Virus name
HBV
Reference genome
NC_003977
Region type
X protein|
Start
1800
Orient
-
Integrated sequence
AGGCATACTTCAAAGACTGTTTGTTTAAAGACTGGGAGGAGTTGGGGGAGGAGATTAGGTTAAAGGTCTTTGTACTAGGAGGCTGTAGGCATAAATTGGT| |CTGCGCACCAGCACCATGCAACTTTTTCACCTCTGCCTAATCATCTCTTGTTCATGTCCTACTGTTCAAGCCTCCAAGCTGTGCCTTGGGTGGCTTTGGG
Host Sequence
Chromosome
chr2
Cytoband
p24.2
Reference genome
GRCh37/hg19
Start
18557438/18376172 (Hg38)
End
18557438/18376172 (Hg38)
Orient
-
Location type
Intergenic
Fragile sites / regions
FRA2C
Nearest miRNA
hsa-mir-3125/Upstream/5638728; hsa-mir-10b/Downstream/972257;
Nearest TSS
ENST00000437798/Upstream/496789; ENST00000431697/Downstream/172032;
Nearest CpG islands
None/Target, chr2-CpG: 135/Upstream/496519, chr2-CpG: 69/Downstream/184030
Nearby gene
KCNS3(-443213) ; NT5C1B-RDH14(+178551) ;
Upstream sequence
gttaattgtaggcacaatattgtgagcagagctctagaatttatttatcttgtgtaagtgaaactacatacattgaagggcaGGGGCCTGTTTTTTAAAG
Downstream sequence
TTGTTTTGTTTTGTCATATACAGCCAAATAAAATGAATACTAATAATAAATAATAaaaactggcttatgaatatatagaaaaactgcagggttttataac
Reference
Yang, L., et al. Molecular Characterization of HBV DNA Integration in Patients with Hepatitis and Hepatocellular Carcinoma. J Cancer ,2018,9(18): 3225-3235.
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